Resources from the Literature

The following list is a collection of papers on genomic and transcriptomic resources for the four eXtreme relatives of Arabidopsis thaliana that are currently detailed on the site. Because it is based on a search of PubMed, there may be some important articles not included. The 100 most recent results are shown in reverse chronological order. Click “Search PubMed” at the end of the list to show all results.

  1. Paape, T, Briskine, RV, Halstead-Nussloch, G, Lischer, HEL, Shimizu-Inatsugi, R, Hatakeyama, M et al. (2018) Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica. Nat Commun 9:3909. doi: 10.1038/s41467-018-06108-1. PubMed PMID:30254374 PubMed Central PMC6156220.
  2. Joshi, G, Chauhan, C, Das, S (2018) Microsynteny analysis to understand evolution and impact of polyploidization on MIR319 family within Brassicaceae. Dev. Genes Evol. :. doi: 10.1007/s00427-018-0620-0. PubMed PMID:30242472 .
  3. Dai, X, Wang, H, Zhou, H, Wang, L, Dvořák, J, Bennetzen, JL et al. (2018) Birth and Death of LTR-Retrotransposons in . Genetics :. doi: 10.1534/genetics.118.301198. PubMed PMID:30158124 .
  4. Kudoh, H, Honjo, MN, Nishio, H, Sugisaka, J (2018) The Long-Term "In Natura" Study Sites of Arabidopsis halleri for Plant Transcription and Epigenetic Modification Analyses in Natural Environments. Methods Mol. Biol. 1830:41-57. doi: 10.1007/978-1-4939-8657-6_3. PubMed PMID:30043363 .
  5. Shamloo-Dashtpagerdi, R, Razi, H, Ebrahimie, E, Niazi, A (2018) Molecular characterization of Brassica napus stress related transcription factors, BnMYB44 and BnVIP1, selected based on comparative analysis of Arabidopsis thaliana and Eutrema salsugineum transcriptomes. Mol. Biol. Rep. 45:1111-1124. doi: 10.1007/s11033-018-4262-0. PubMed PMID:30039430 .
  6. Buckley, J, Holub, EB, Koch, MA, Vergeer, P, Mable, BK (2018) Restriction associated DNA-genotyping at multiple spatial scales in Arabidopsis lyrata reveals signatures of pathogen-mediated selection. BMC Genomics 19:496. doi: 10.1186/s12864-018-4806-7. PubMed PMID:29945543 PubMed Central PMC6020377.
  7. Göbel, U, Arce, AL, He, F, Rico, A, Schmitz, G, de Meaux, J et al. (2018) Robustness of Transposable Element Regulation but No Genomic Shock Observed in Interspecific Arabidopsis Hybrids. Genome Biol Evol 10:1403-1415. doi: 10.1093/gbe/evy095. PubMed PMID:29788048 PubMed Central PMC6007786.
  8. Bonchev, G, Willi, Y (2018) Accumulation of transposable elements in selfing populations of Arabidopsis lyrata supports the ectopic recombination model of transposon evolution. New Phytol. 219:767-778. doi: 10.1111/nph.15201. PubMed PMID:29757461 .
  9. Hämälä, T, Mattila, TM, Savolainen, O (2018) Local adaptation and ecological differentiation under selection, migration, and drift in Arabidopsis lyrata. Evolution :. doi: 10.1111/evo.13502. PubMed PMID:29741234 .
  10. Payne, BL, Alvarez-Ponce, D (2018) Higher Rates of Protein Evolution in the Self-Fertilizing Plant Arabidopsis thaliana than in the Out-Crossers Arabidopsis lyrata and Arabidopsis halleri. Genome Biol Evol 10:895-900. doi: 10.1093/gbe/evy053. PubMed PMID:29608724 PubMed Central PMC5865523.
  11. Jain, A, Anand, S, Singh, NK, Das, S (2018) Sequence and functional characterization of MIRNA164 promoters from Brassica shows copy number dependent regulatory diversification among homeologs. Funct. Integr. Genomics 18:369-383. doi: 10.1007/s10142-018-0598-8. PubMed PMID:29532337 .
  12. Hanada, K, Tezuka, A, Nozawa, M, Suzuki, Y, Sugano, S, Nagano, AJ et al. (2018) Functional divergence of duplicate genes several million years after gene duplication in Arabidopsis. DNA Res. :. doi: 10.1093/dnares/dsy005. PubMed PMID:29481587 PubMed Central PMC6014284.
  13. Novikova, PY, Hohmann, N, Van de Peer, Y (2018) Polyploid Arabidopsis species originated around recent glaciation maxima. Curr. Opin. Plant Biol. 42:8-15. doi: 10.1016/j.pbi.2018.01.005. PubMed PMID:29448159 .
  14. Schvartzman, MS, Corso, M, Fataftah, N, Scheepers, M, Nouet, C, Bosman, B et al. (2018) Adaptation to high zinc depends on distinct mechanisms in metallicolous populations of Arabidopsis halleri. New Phytol. 218:269-282. doi: 10.1111/nph.14949. PubMed PMID:29292833 .
  15. Erdmann, RM, Satyaki, PRV, Klosinska, M, Gehring, M (2017) A Small RNA Pathway Mediates Allelic Dosage in Endosperm. Cell Rep 21:3364-3372. doi: 10.1016/j.celrep.2017.11.078. PubMed PMID:29262317 .
  16. Wos, G, Willi, Y (2018) Thermal acclimation in Arabidopsis lyrata: genotypic costs and transcriptional changes. J. Evol. Biol. 31:123-135. doi: 10.1111/jeb.13208. PubMed PMID:29134788 .
  17. Zhang, X, Liu, W, Nagae, TT, Takeuchi, H, Zhang, H, Han, Z et al. (2017) Structural basis for receptor recognition of pollen tube attraction peptides. Nat Commun 8:1331. doi: 10.1038/s41467-017-01323-8. PubMed PMID:29109411 PubMed Central PMC5673899.
  18. Chica, C, Louis, A, Roest Crollius, H, Colot, V, Roudier, F (2017) Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation. Genome Biol. 18:207. doi: 10.1186/s13059-017-1333-9. PubMed PMID:29084582 PubMed Central PMC5663038.
  19. Hohmann, N, Koch, MA (2017) An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes. BMC Genomics 18:810. doi: 10.1186/s12864-017-4220-6. PubMed PMID:29058582 PubMed Central PMC5651623.
  20. Mattila, TM, Tyrmi, J, Pyhäjärvi, T, Savolainen, O (2017) Genome-Wide Analysis of Colonization History and Concomitant Selection in Arabidopsis lyrata. Mol. Biol. Evol. 34:2665-2677. doi: 10.1093/molbev/msx193. PubMed PMID:28957505 .
  21. Zhao, P, Wang, L, Zhao, X, Chen, G, Ma, XF (2017) A comparative transcriptomic analysis reveals the core genetic components of salt and osmotic stress responses in Braya humilis. PLoS ONE 12:e0183778. doi: 10.1371/journal.pone.0183778. PubMed PMID:28859098 PubMed Central PMC5578489.
  22. Zhu, W, Hu, B, Becker, C, Doğan, ES, Berendzen, KW, Weigel, D et al. (2017) Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. Genome Biol. 18:157. doi: 10.1186/s13059-017-1281-4. PubMed PMID:28830561 PubMed Central PMC5568265.
  23. Asaf, S, Khan, AL, Khan, MA, Waqas, M, Kang, SM, Yun, BW et al. (2017) Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis. Sci Rep 7:7556. doi: 10.1038/s41598-017-07891-5. PubMed PMID:28790364 PubMed Central PMC5548756.
  24. Bechsgaard, J, Jorgensen, TH, Schierup, MH (2017) Evidence for Adaptive Introgression of Disease Resistance Genes Among Closely Related Species. G3 (Bethesda) 7:2677-2683. doi: 10.1534/g3.117.043984. PubMed PMID:28630104 PubMed Central PMC5555472.
  25. Sonah, H, Deshmukh, RK, Labbé, C, Bélanger, RR (2017) Analysis of aquaporins in Brassicaceae species reveals high-level of conservation and dynamic role against biotic and abiotic stress in canola. Sci Rep 7:2771. doi: 10.1038/s41598-017-02877-9. PubMed PMID:28584277 PubMed Central PMC5459863.
  26. Mondragón-Palomino, M, John-Arputharaj, A, Pallmann, M, Dresselhaus, T (2017) Similarities between Reproductive and Immune Pistil Transcriptomes of Species. Plant Physiol. 174:1559-1575. doi: 10.1104/pp.17.00390. PubMed PMID:28483878 PubMed Central PMC5490908.
  27. Hämälä, T, Mattila, TM, Leinonen, PH, Kuittinen, H, Savolainen, O (2017) Role of seed germination in adaptation and reproductive isolation in Arabidopsis lyrata. Mol. Ecol. 26:3484-3496. doi: 10.1111/mec.14135. PubMed PMID:28393414 .
  28. Armero, A, Baudouin, L, Bocs, S, This, D (2017) Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut. PLoS ONE 12:e0173300. doi: 10.1371/journal.pone.0173300. PubMed PMID:28334050 PubMed Central PMC5363918.
  29. Takuno, S, Seymour, DK, Gaut, BS (2017) The Evolutionary Dynamics of Orthologs That Shift in Gene Body Methylation between Arabidopsis Species. Mol. Biol. Evol. 34:1479-1491. doi: 10.1093/molbev/msx099. PubMed PMID:28333248 .
  30. Fasani, E, DalCorso, G, Varotto, C, Li, M, Visioli, G, Mattarozzi, M et al. (2017) The MTP1 promoters from Arabidopsis halleri reveal cis-regulating elements for the evolution of metal tolerance. New Phytol. 214:1614-1630. doi: 10.1111/nph.14529. PubMed PMID:28332702 .
  31. Suryawanshi, V, Talke, IN, Weber, M, Eils, R, Brors, B, Clemens, S et al. (2016) Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri. BMC Genomics 17:1034. doi: 10.1186/s12864-016-3319-5. PubMed PMID:28155655 PubMed Central PMC5259951.
  32. Eshel, G, Shaked, R, Kazachkova, Y, Khan, A, Eppel, A, Cisneros, A et al. (2016) , an Desert Relative, Is Tolerant to Multiple Abiotic Stresses and Exhibits Species-Specific and Common Stress Tolerance Strategies with Its Halophytic Relative, . Front Plant Sci 7:1992. doi: 10.3389/fpls.2016.01992. PubMed PMID:28144244 PubMed Central PMC5239783.
  33. Abdelkarim, BT, Maranda, V, Drouin, G (2017) The fate of retrotransposed processed genes in Arabidopsis thaliana. Gene 609:1-8. doi: 10.1016/j.gene.2017.01.029. PubMed PMID:28131821 .
  34. Fischer, MC, Rellstab, C, Leuzinger, M, Roumet, M, Gugerli, F, Shimizu, KK et al. (2017) Estimating genomic diversity and population differentiation - an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri. BMC Genomics 18:69. doi: 10.1186/s12864-016-3459-7. PubMed PMID:28077077 PubMed Central PMC5225627.
  35. Yuan, C, Meng, X, Li, X, Illing, N, Ingle, RA, Wang, J et al. (2017) PceRBase: a database of plant competing endogenous RNA. Nucleic Acids Res. 45:D1009-D1014. doi: 10.1093/nar/gkw916. PubMed PMID:28053167 PubMed Central PMC5210625.
  36. Yant, L, Bomblies, K (2017) Genomic studies of adaptive evolution in outcrossing Arabidopsis species. Curr. Opin. Plant Biol. 36:9-14. doi: 10.1016/j.pbi.2016.11.018. PubMed PMID:27988391 .
  37. Heidel, AJ, Kiefer, C, Coupland, G, Rose, LE (2016) Pinpointing genes underlying annual/perennial transitions with comparative genomics. BMC Genomics 17:921. doi: 10.1186/s12864-016-3274-1. PubMed PMID:27846808 PubMed Central PMC5111240.
  38. Mable, BK, Hagmann, J, Kim, ST, Adam, A, Kilbride, E, Weigel, D et al. (2017) What causes mating system shifts in plants? Arabidopsis lyrata as a case study. Heredity (Edinb) 118:52-63. doi: 10.1038/hdy.2016.99. PubMed PMID:27804968 PubMed Central PMC5176122.
  39. Gaborieau, L, Brown, GG (2016) Comparative genomic analysis of the compound Brassica napus Rf locus. BMC Genomics 17:834. doi: 10.1186/s12864-016-3117-0. PubMed PMID:27782804 PubMed Central PMC5080715.
  40. Briskine, RV, Paape, T, Shimizu-Inatsugi, R, Nishiyama, T, Akama, S, Sese, J et al. (2017) Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology. Mol Ecol Resour 17:1025-1036. doi: 10.1111/1755-0998.12604. PubMed PMID:27671113 .
  41. Braverman, JM, Hamilton, MB, Johnson, BA (2016) Patterns of Substitution Rate Variation at Many Nuclear Loci in Two Species Trios in the Brassicaceae Partitioned with ANOVA. J. Mol. Evol. 83:97-109. doi: 10.1007/s00239-016-9752-x. PubMed PMID:27592229 .
  42. Pietzenuk, B, Markus, C, Gaubert, H, Bagwan, N, Merotto, A, Bucher, E et al. (2016) Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements. Genome Biol. 17:209. doi: 10.1186/s13059-016-1072-3. PubMed PMID:27729060 PubMed Central PMC5059998.
  43. Rellstab, C, Fischer, MC, Zoller, S, Graf, R, Tedder, A, Shimizu, KK et al. (2017) Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri. Heredity (Edinb) 118:193-201. doi: 10.1038/hdy.2016.82. PubMed PMID:27703154 PubMed Central PMC5234484.
  44. Klosinska, M, Picard, CL, Gehring, M (2016) Conserved imprinting associated with unique epigenetic signatures in the Arabidopsis genus. Nat Plants 2:16145. doi: 10.1038/nplants.2016.145. PubMed PMID:27643534 PubMed Central PMC5367468.
  45. Kamitani, M, Nagano, AJ, Honjo, MN, Kudoh, H (2016) RNA-Seq reveals virus-virus and virus-plant interactions in nature. FEMS Microbiol. Ecol. 92:. doi: 10.1093/femsec/fiw176. PubMed PMID:27549115 PubMed Central PMC5854034.
  46. Meyer, CL, Pauwels, M, Briset, L, Godé, C, Salis, P, Bourceaux, A et al. (2016) Potential preadaptation to anthropogenic pollution: evidence from a common quantitative trait locus for zinc and cadmium tolerance in metallicolous and nonmetallicolous accessions of Arabidopsis halleri. New Phytol. 212:934-943. doi: 10.1111/nph.14093. PubMed PMID:27504589 .
  47. Wang, J, Tao, F, Marowsky, NC, Fan, C (2016) Evolutionary Fates and Dynamic Functionalization of Young Duplicate Genes in Arabidopsis Genomes. Plant Physiol. 172:427-40. doi: 10.1104/pp.16.01177. PubMed PMID:27485883 PubMed Central PMC5074645.
  48. Bewick, AJ, Ji, L, Niederhuth, CE, Willing, EM, Hofmeister, BT, Shi, X et al. (2016) On the origin and evolutionary consequences of gene body DNA methylation. Proc. Natl. Acad. Sci. U.S.A. 113:9111-6. doi: 10.1073/pnas.1604666113. PubMed PMID:27457936 PubMed Central PMC4987809.
  49. Paape, T, Hatakeyama, M, Shimizu-Inatsugi, R, Cereghetti, T, Onda, Y, Kenta, T et al. (2016) Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the Allotetraploid Arabidopsis kamchatica. Mol. Biol. Evol. 33:2781-2800. doi: 10.1093/molbev/msw141. PubMed PMID:27413047 PubMed Central PMC5062318.
  50. Arnold, BJ, Lahner, B, DaCosta, JM, Weisman, CM, Hollister, JD, Salt, DE et al. (2016) Borrowed alleles and convergence in serpentine adaptation. Proc. Natl. Acad. Sci. U.S.A. 113:8320-5. doi: 10.1073/pnas.1600405113. PubMed PMID:27357660 PubMed Central PMC4961121.
  51. Das, M, Haberer, G, Panda, A, Das Laha, S, Ghosh, TC, Schäffner, AR et al. (2016) Expression Pattern Similarities Support the Prediction of Orthologs Retaining Common Functions after Gene Duplication Events. Plant Physiol. 171:2343-57. doi: 10.1104/pp.15.01207. PubMed PMID:27303025 PubMed Central PMC4972257.
  52. Hoffmann, RD, Palmgren, M (2016) Purifying selection acts on coding and non-coding sequences of paralogous genes in Arabidopsis thaliana. BMC Genomics 17:456. doi: 10.1186/s12864-016-2803-2. PubMed PMID:27296049 PubMed Central PMC4906602.
  53. He, F, Arce, AL, Schmitz, G, Koornneef, M, Novikova, P, Beyer, A et al. (2016) The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus. Mol. Biol. Evol. 33:2088-101. doi: 10.1093/molbev/msw096. PubMed PMID:27189540 .
  54. Indriolo, E, Goring, DR (2016) Yeast two-hybrid interactions between Arabidopsis lyrata S Receptor Kinase and the ARC1 E3 ligase. Plant Signal Behav 11:e1188233. doi: 10.1080/15592324.2016.1188233. PubMed PMID:27175603 PubMed Central PMC4973788.
  55. Baliardini, C, Corso, M, Verbruggen, N (2016) Transcriptomic analysis supports the role of CATION EXCHANGER 1 in cellular homeostasis and oxidative stress limitation during cadmium stress. Plant Signal Behav 11:e1183861. doi: 10.1080/15592324.2016.1183861. PubMed PMID:27172138 PubMed Central PMC4973759.
  56. Buckley, J, Kilbride, E, Cevik, V, Vicente, JG, Holub, EB, Mable, BK et al. (2016) R-gene variation across Arabidopsis lyrata subspecies: effects of population structure, selection and mating system. BMC Evol. Biol. 16:93. doi: 10.1186/s12862-016-0665-5. PubMed PMID:27150007 PubMed Central PMC4858910.
  57. Rathore, P, Geeta, R, Das, S (2016) Microsynteny and phylogenetic analysis of tandemly organised miRNA families across five members of Brassicaceae reveals complex retention and loss history. Plant Sci. 247:35-48. doi: 10.1016/j.plantsci.2016.03.002. PubMed PMID:27095398 .
  58. Fedorenko, OM, Zaretskaya, MV (2015) [Specific Features of Microsatellite Polymorphism in Two Species of Arabidopsis]. Genetika 51:1391-400. . PubMed PMID:27055299 .
  59. Velasco, VM, Mansbridge, J, Bremner, S, Carruthers, K, Summers, PS, Sung, WW et al. (2016) Acclimation of the crucifer Eutrema salsugineum to phosphate limitation is associated with constitutively high expression of phosphate-starvation genes. Plant Cell Environ. 39:1818-34. doi: 10.1111/pce.12750. PubMed PMID:27038434 .
  60. Fu, L, Han, B, Tan, D, Wang, M, Ding, M, Zhang, J et al. (2016) Identification and Evolution of Functional Alleles of the Previously Described Pollen Specific Myrosinase Pseudogene AtTGG6 in Arabidopsis thaliana. Int J Mol Sci 17:262. doi: 10.3390/ijms17020262. PubMed PMID:26907263 PubMed Central PMC4783991.
  61. Wu, Y, Guo, J, Cai, Y, Gong, X, Xiong, X, Qi, W et al. (2016) Genome-wide identification and characterization of Eutrema salsugineum microRNAs for salt tolerance. Physiol Plant 157:453-68. doi: 10.1111/ppl.12419. PubMed PMID:26806325 .
  62. Shen, Y, Liu, M, Wang, L, Li, Z, Taylor, DC, Li, Z et al. (2016) Identification, duplication, evolution and expression analyses of caleosins in Brassica plants and Arabidopsis subspecies. Mol. Genet. Genomics 291:971-88. doi: 10.1007/s00438-015-1156-x. PubMed PMID:26786939 .
  63. Videvall, E, Sletvold, N, Hagenblad, J, Ågren, J, Hansson, B (2016) Strong Maternal Effects on Gene Expression in Arabidopsis lyrata Hybrids. Mol. Biol. Evol. 33:984-94. doi: 10.1093/molbev/msv342. PubMed PMID:26685177 .
  64. Murat, F, Louis, A, Maumus, F, Armero, A, Cooke, R, Quesneville, H et al. (2015) Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biol. 16:262. doi: 10.1186/s13059-015-0814-y. PubMed PMID:26653025 PubMed Central PMC4675067.
  65. Wang, X, Wu, J, Liang, J, Cheng, F, Wang, X (2015) Brassica database (BRAD) version 2.0: integrating and mining Brassicaceae species genomic resources. Database (Oxford) 2015:. doi: 10.1093/database/bav093. PubMed PMID:26589635 PubMed Central PMC4653866.
  66. Fracassetti, M, Griffin, PC, Willi, Y (2015) Validation of Pooled Whole-Genome Re-Sequencing in Arabidopsis lyrata. PLoS ONE 10:e0140462. doi: 10.1371/journal.pone.0140462. PubMed PMID:26461136 PubMed Central PMC4604096.
  67. Muiño, JM, de Bruijn, S, Pajoro, A, Geuten, K, Vingron, M, Angenent, GC et al. (2016) Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor. Mol. Biol. Evol. 33:185-200. doi: 10.1093/molbev/msv210. PubMed PMID:26429922 PubMed Central PMC4693976.
  68. Rawat, V, Abdelsamad, A, Pietzenuk, B, Seymour, DK, Koenig, D, Weigel, D et al. (2015) Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data. PLoS ONE 10:e0137391. doi: 10.1371/journal.pone.0137391. PubMed PMID:26382944 PubMed Central PMC4575116.
  69. Hao, G, Bi, H, Li, Y, He, Q, Ma, Y, Guo, X et al. (2016) The whole chloroplast genomes of two Eutrema species (Brassicaceae). Mitochondrial DNA A DNA Mapp Seq Anal 27:3727-8. doi: 10.3109/19401736.2015.1079877. PubMed PMID:26329763 .
  70. He, Q, Hao, G, Wang, X, Bi, H, Li, Y, Guo, X et al. (2016) The complete chloroplast genome of Schrenkiella parvula (Brassicaceae). Mitochondrial DNA A DNA Mapp Seq Anal 27:3527-8. doi: 10.3109/19401736.2015.1074202. PubMed PMID:26260181 .
  71. Kubota, S, Iwasaki, T, Hanada, K, Nagano, AJ, Fujiyama, A, Toyoda, A et al. (2015) A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species. PLoS Genet. 11:e1005361. doi: 10.1371/journal.pgen.1005361. PubMed PMID:26172569 PubMed Central PMC4501782.
  72. Baliardini, C, Meyer, CL, Salis, P, Saumitou-Laprade, P, Verbruggen, N (2015) CATION EXCHANGER1 Cosegregates with Cadmium Tolerance in the Metal Hyperaccumulator Arabidopsis halleri and Plays a Role in Limiting Oxidative Stress in Arabidopsis Spp. Plant Physiol. 169:549-59. doi: 10.1104/pp.15.01037. PubMed PMID:26162428 PubMed Central PMC4577435.
  73. Guo, X, Hao, G, Ma, T (2016) The complete chloroplast genome of salt cress (Eutrema salsugineum). Mitochondrial DNA A DNA Mapp Seq Anal 27:2862-3. doi: 10.3109/19401736.2015.1053130. PubMed PMID:26114321 .
  74. Lehti-Shiu, MD, Uygun, S, Moghe, GD, Panchy, N, Fang, L, Hufnagel, DE et al. (2015) Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol. 168:1717-34. doi: 10.1104/pp.15.00689. PubMed PMID:26103993 PubMed Central PMC4528766.
  75. Mucha, S, Walther, D, Müller, TM, Hincha, DK, Glawischnig, E (2015) Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge. BMC Plant Biol. 15:137. doi: 10.1186/s12870-015-0506-5. PubMed PMID:26063239 PubMed Central PMC4464140.
  76. Nouet, C, Charlier, JB, Carnol, M, Bosman, B, Farnir, F, Motte, P et al. (2015) Functional analysis of the three HMA4 copies of the metal hyperaccumulator Arabidopsis halleri. J. Exp. Bot. 66:5783-95. doi: 10.1093/jxb/erv280. PubMed PMID:26044091 PubMed Central PMC4566976.
  77. Wang, XJ, Shi, DC, Wang, XY, Wang, J, Sun, YS, Liu, JQ et al. (2015) Evolutionary Migration of the Disjunct Salt Cress Eutrema salsugineum (= Thellungiella salsuginea, Brassicaceae) between Asia and North America. PLoS ONE 10:e0124010. doi: 10.1371/journal.pone.0124010. PubMed PMID:25970468 PubMed Central PMC4430283.
  78. Bush, SJ, Kover, PX, Urrutia, AO (2015) Lineage-specific sequence evolution and exon edge conservation partially explain the relationship between evolutionary rate and expression level in A. thaliana. Mol. Ecol. 24:3093-106. doi: 10.1111/mec.13221. PubMed PMID:25930165 PubMed Central PMC4480654.
  79. Zhang, YM, Shao, ZQ, Wang, Q, Hang, YY, Xue, JY, Wang, B et al. (2016) Uncovering the dynamic evolution of nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes in Brassicaceae. J Integr Plant Biol 58:165-77. doi: 10.1111/jipb.12365. PubMed PMID:25926337 .
  80. Charlier, JB, Polese, C, Nouet, C, Carnol, M, Bosman, B, Krämer, U et al. (2015) Zinc triggers a complex transcriptional and post-transcriptional regulation of the metal homeostasis gene FRD3 in Arabidopsis relatives. J. Exp. Bot. 66:3865-78. doi: 10.1093/jxb/erv188. PubMed PMID:25900619 PubMed Central PMC4473987.
  81. Milia, G, Camiolo, S, Avesani, L, Porceddu, A (2015) The dynamic loss and gain of introns during the evolution of the Brassicaceae. Plant J. 82:915-24. doi: 10.1111/tpj.12860. PubMed PMID:25899207 .
  82. Menzel, M, Sletvold, N, Ågren, J, Hansson, B (2015) Inbreeding Affects Gene Expression Differently in Two Self-Incompatible Arabidopsis lyrata Populations with Similar Levels of Inbreeding Depression. Mol. Biol. Evol. 32:2036-47. doi: 10.1093/molbev/msv086. PubMed PMID:25855783 PubMed Central PMC4833072.
  83. Rea, AC, Nasrallah, JB (2015) In vivo imaging of the S-locus receptor kinase, the female specificity determinant of self-incompatibility, in transgenic self-incompatible Arabidopsis thaliana. Ann. Bot. 115:789-805. doi: 10.1093/aob/mcv008. PubMed PMID:25714818 PubMed Central PMC4373290.
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