Rhizophora spp. – Resources from the literature

The following list was generated by searching PubMed, limiting the list to 100 references.  As there are many journals not indexed there, this list will be incomplete.

  1. Hodel, RGJ, Knowles, LL, McDaniel, SF, Payton, AC, Dunaway, JF, Soltis, PS et al. (2018) Terrestrial species adapted to sea dispersal: Differences in propagule dispersal of two Caribbean mangroves. Mol. Ecol. 27:4612-4626. doi: 10.1111/mec.14894. PubMed PMID:30308703 .
  2. Bajay, SK, Cruz, MV, da Silva, CC, Murad, NF, Brandão, MM, de Souza, AP et al. (2018) Extremophiles as a Model of a Natural Ecosystem: Transcriptional Coordination of Genes Reveals Distinct Selective Responses of Plants Under Climate Change Scenarios. Front Plant Sci 9:1376. doi: 10.3389/fpls.2018.01376. PubMed PMID:30283484 PubMed Central PMC6156123.
  3. Wang, Y, Liang, W, Tang, T (2018) Constant conflict between Gypsy LTR retrotransposons and CHH methylation within a stress-adapted mangrove genome. New Phytol. 220:922-935. doi: 10.1111/nph.15209. PubMed PMID:29762876 .
  4. Hodel, RGJ, Chen, S, Payton, AC, McDaniel, SF, Soltis, P, Soltis, DE et al. (2017) Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering. Sci Rep 7:17598. doi: 10.1038/s41598-017-16810-7. PubMed PMID:29242627 PubMed Central PMC5730610.
  5. Xu, S, He, Z, Zhang, Z, Guo, Z, Guo, W, Lyu, H et al. (2017) The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing. Natl Sci Rev 4:721-734. doi: 10.1093/nsr/nwx065. PubMed PMID:31258950 PubMed Central PMC6599620.
  6. Gao, SS, Li, XM, Williams, K, Proksch, P, Ji, NY, Wang, BG et al. (2016) Rhizovarins A-F, Indole-Diterpenes from the Mangrove-Derived Endophytic Fungus Mucor irregularis QEN-189. J. Nat. Prod. 79:2066-74. doi: 10.1021/acs.jnatprod.6b00403. PubMed PMID:27462726 .
  7. Kennedy, JP, Pil, MW, Proffitt, CE, Boeger, WA, Stanford, AM, Devlin, DJ et al. (2016) Postglacial expansion pathways of red mangrove, Rhizophora mangle, in the Caribbean Basin and Florida. Am. J. Bot. 103:260-76. doi: 10.3732/ajb.1500183. PubMed PMID:26838364 .
  8. Gharat, SA, Shaw, BP (2015) Novel and conserved miRNAs in the halophyte Suaeda maritima identified by deep sequencing and computational predictions using the ESTs of two mangrove plants. BMC Plant Biol. 15:301. doi: 10.1186/s12870-015-0682-3. PubMed PMID:26714456 PubMed Central PMC4696257.
  9. Chen, Y, Hou, Y, Guo, Z, Wang, W, Zhong, C, Zhou, R et al. (2015) Applications of Multiple Nuclear Genes to the Molecular Phylogeny, Population Genetics and Hybrid Identification in the Mangrove Genus Rhizophora. PLoS ONE 10:e0145058. doi: 10.1371/journal.pone.0145058. PubMed PMID:26674070 PubMed Central PMC4682636.
  10. Wee, AK, Takayama, K, Chua, JL, Asakawa, T, Meenakshisundaram, SH, Onrizal, et al. (2015) Genetic differentiation and phylogeography of partially sympatric species complex Rhizophora mucronata Lam. and R. stylosa Griff. using SSR markers. BMC Evol. Biol. 15:57. doi: 10.1186/s12862-015-0331-3. PubMed PMID:25888261 PubMed Central PMC4389924.
  11. Lo, EY, Duke, NC, Sun, M (2014) Phylogeographic pattern of Rhizophora (Rhizophoraceae) reveals the importance of both vicariance and long-distance oceanic dispersal to modern mangrove distribution. BMC Evol. Biol. 14:83. doi: 10.1186/1471-2148-14-83. PubMed PMID:24742016 PubMed Central PMC4021169.
  12. Sandoval-Castro, E, Dodd, RS, Riosmena-Rodríguez, R, Enríquez-Paredes, LM, Tovilla-Hernández, C, López-Vivas, JM et al. (2014) Post-glacial expansion and population genetic divergence of mangrove species Avicennia germinans (L.) Stearn and Rhizophora mangle L. along the Mexican coast. PLoS ONE 9:e93358. doi: 10.1371/journal.pone.0093358. PubMed PMID:24699389 PubMed Central PMC3974753.
  13. Sahebi, M, Hanafi, MM, Abdullah, SN, Rafii, MY, Azizi, P, Nejat, N et al. (2014) Isolation and expression analysis of novel silicon absorption gene from roots of mangrove (Rhizophora apiculata) via suppression subtractive hybridization. Biomed Res Int 2014:971985. doi: 10.1155/2014/971985. PubMed PMID:24516858 PubMed Central PMC3910099.
  14. Gurudeeban, S, Satyavani, K, Ramanathan, T (2013) Phylogeny of Indian rhizophoraceae based on the molecular data from chloroplast tRNA(LEU)UAA intergenic sequences. Pak. J. Biol. Sci. 16:1130-7. doi: 10.3923/pjbs.2013.1130.1137. PubMed PMID:24506012 .
  15. Yahya, AF, Hyun, JO, Lee, JH, Kim, YY, Lee, KM, Hong, KN et al. (2014) Genetic variation and population genetic structure of Rhizophora apiculata (Rhizophoraceae) in the Greater Sunda Islands, Indonesia using microsatellite markers. J. Plant Res. 127:287-97. doi: 10.1007/s10265-013-0613-z. PubMed PMID:24323307 .
  16. Takayama, K, Tamura, M, Tateishi, Y, Webb, EL, Kajita, T (2013) Strong genetic structure over the American continents and transoceanic dispersal in the mangrove genus Rhizophora (Rhizophoraceae) revealed by broad-scale nuclear and chloroplast DNA analysis. Am. J. Bot. 100:1191-201. doi: 10.3732/ajb.1200567. PubMed PMID:23711904 .
  17. Cerón-Souza, I, Bermingham, E, McMillan, WO, Jones, FA (2012) Comparative genetic structure of two mangrove species in Caribbean and Pacific estuaries of Panama. BMC Evol. Biol. 12:205. doi: 10.1186/1471-2148-12-205. PubMed PMID:23078287 PubMed Central PMC3543234.
  18. Pil, MW, Boeger, MR, Muschner, VC, Pie, MR, Ostrensky, A, Boeger, WA et al. (2011) Postglacial north-south expansion of populations of Rhizophora mangle (Rhizophoraceae) along the Brazilian coast revealed by microsatellite analysis. Am. J. Bot. 98:1031-9. doi: 10.3732/ajb.1000392. PubMed PMID:21653512 .
  19. Dassanayake, M, Haas, JS, Bohnert, HJ, Cheeseman, JM (2009) Shedding light on an extremophile lifestyle through transcriptomics. New Phytol. 183:764-75. doi: 10.1111/j.1469-8137.2009.02913.x. PubMed PMID:19549131 .
  20. Mukherjee, AK, Acharya, L, Panda, PC, Mohapatra, T, Das, P Genomic relations among two non-mangrove and nine mangrove species of Indian Rhizophoraceae. Z. Naturforsch., C, J. Biosci. 59:572-8. doi: 10.1515/znc-2004-7-822. PubMed PMID:15813382 .
  21. Parani, M, Rajesh, K, Lakshmi, M, Parducci, L, Szmidt, AE, Parida, A et al. (2001) Species identification in seven small millet species using polymerase chain reaction-restriction fragment length polymorphism of trnS-psbC gene region. Genome 44:495-9. doi: 10.1139/g01-023. PubMed PMID:11444709 .
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